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|  Journal of Biomaterials and Nanobiotechnology, 2011, 2, 41-48  doi:10.4236/jbnb.2011.21006 Published Online January 2011 (http://www.SciRP.org/journal/jbnb)  Copyright © 2011 SciRes.                                                                             JBNB  41 Simple Modifications to Standard TRIzol®  Protocol Allow High-Yield RNA Extraction   from Cells on Resorbable Materials  Juliana Tsz Yan Lee1, Wai Hung Tsang2,3, King Lau Chow1,2,3  1Bioengineering Graduate Program, The Hong Kong University of Science and Technology, Hong Kong, China; 2Department of  Biology, The Hong Kong University of Science and Technology, Hong Kong, China; 3Division of Life Science, The Hong Kong  University of Science and Technology, Hong Kong, China.  Email: juliana@ust.hk  Received October 14th, 2010; revised November 25th, 2010; accepted December 3rd, 2010.  ABSTRACT  Resorbable bioceramics are attractive for medical applications such as bone substitution. Biochemical analysis on cells  cultured on these biomaterials is vital to predict the impact of the materials in vivo and RNA extraction is an essential  step in gene expression study using RT-qPCR. In this study, we describe simple modifications to the TRIzol® RNA ex- traction protocol widely used in biology and these allow high-yield extraction of RNA from cells on resorbable calcium  phosphates. Without the modifications, RNA is trapped in the co-precipitated calcium compounds, rendering TRIzol®  extraction method infeasible. Among the modifications, the use of extra TRIzol® to dilute the lysate before the RNA pre- cipitation step is critical for extraction of RNA from porous   -tricalcium phosphate (  -TCP) discs. We also investigate  the rationale behind the undesirable precipitation so as to provide clues about the modifications required for other re- sorbable materials with high application potential in bone tissue engineering.  Keywords: Calcium Phosphate, Resorbable Materials, RNA Extraction, TRIzol, Acid Guanidium Thiocyanate - Phenol -  Chloroform Extraction, TRI Reagent, TRIsure  1. Introduction  Resorbable bioceramics with relatively high solubility  are attractive materials to be used as bone substitutes  since the implanted materials can eventually be replaced  by bone newly formed in vivo [1-4]. In order to under- stand the cell-material interaction, gene expression of  cells cultured on the materials is often monitored by  means of RT-qPCR as several genes can be assessed at  the same time. RNA extraction is an important step for  RT-qPCR, especially for reliable quantification of gene  expression level. TRIzol®, TRI Reagent® and TRIsureTM  are commonly used commercial products from different  companies for RNA extraction. They are modified ver- sions of the single-step acid guanidium thiocyanate-  phenol- chloroform extraction technique developed by  Chomczynski and Sacchi, which is particularly useful for  processing of large numbers of samples and for isolation  of RNA from minute quantities of cells or tissue samples  [5,6].   Nevertheless, this method cannot be applied to re-  sorbable calcium phosphate ceramics directly as ions  dissolved from the ceramics would co-precipitate with  the RNA in the alcohol precipitation step, which prevents  the RNA from being re-dissolved into aqueous solution  in subsequent steps. The silica-gel affinity based method  may be a feasible alternative for extracting RNA from  resorbable -tricalcium phosphate (-TCP) [7,8] but the  cost is usually much higher. Besides, TRIzol® gives a  yield of 2.4 to 93 times higher than that using silica  based protocol as demonstrated in reports using different  biological samples [9-11]. High yield in RNA extraction  is of particular importance in certain biomaterial studies  due to the limited supply of expensive biomaterial scaf- folds and the maximization of the number of samples that  can be handled in each batch of experiment using cell  culture. Furthermore, higher RNA concentration is at- tainable using this method even for the same yield of  RNA compared with silica gel based methods as the pel- leted RNA can be dissolved in a small volume (10 µL) of  buffer while a relatively large volume (100 µL) of buffer    Simple Modifications to Standard TRIzol® Protocol Allow High-Yield RNA Extraction from Cells on Resorbable Materials  Copyright © 2011 SciRes.                                                                              JBNB  42  is required for efficient elution of RNA from the silica  gel.  In order to use TRIzol® to extract RNA from cells on  resorbable biomaterials, we carried out studies to devise  modifications to standard protocol, which allow high  quality RNA to be extracted from cells grown on -TCP.  In addition, modifications that may be required for other  resorbable materials were suggested based on analysis of  the parameters affecting the undesirable co-precipitation.    2. Materials and Methods  2.1. Materials, Cell Culture and RNA Extraction  10mm porous α-TCP discs were synthesized by foaming  method using 5% hydrogen peroxide (H2O2) solution as  described [12] in the National Engineering Research  Center for Biomaterials in Sichuan University, China.  For cell culture study, 9 × 104 C3H10T1/2 cells (pluripo- tent mesenchymal stem cells, CCL-226™, ATCC) were  plated on the -TCP disc and subjected to RNA extrac- tion using TRIzol® reagent (Invitrogen) after 6 days of  culture according to the manufacturer’s instruction ex- cept drying the disc with absorbent paper and crushing  the discs in TRIzol® with subsequent TCP debris re- moval by centrifugation during the homogenization step.  Without further modifying the protocol, undesirable  co-precipitation occurred in the RNA precipitation step.  2.2. Analysis on Precipitation  We studied the chemical composition of the precipitate  by energy-dispersive X-ray spectroscopy (EDX) after  sputtering with gold and the crystal morphology by scan- ning electron microscopy (SEM; JSM-6390, JEOL, Ja- pan). To study the parameters affecting the undesirable  co-precipitation process, different salts were added dur- ing the phase separation step of the TRIzol® protocol  using cell free system as shown in Table 3 followed by  studies on effects of dilution, pH and temperature (Table  4). Based on results from these experiments, further  modifications to the protocol were made and RNA could  be extracted eventually.    2.3. RNA Quality Check  The quality and yield of the extracted RNA were as- sessed through gel electrophoresis and UV spectrometry  (NanoDrop 1000, Thermo Scientific). The compatibility  of the extracted RNA with RT-PCR and RT-qPCR,  commonly used techniques for gene expression study,  were also tested with the following procedures. DNase I  treatment was performed with 500ng RNA using Ampli- fication Grade DNase I (Invitrogen) and reverse-trans-  cribed (RT) into single stranded cDNA using High Ca- pacity RNA-to-cDNA Master Mix (Applied Biosystems)  according to the manufacturers’ protocol with 5L and  20L reaction volumes respectively. PCR was performed  with β-Actin and Col1 genes using primer pairs listed in  Table 1 with an annealing temperature of 53°C for both  pairs. qPCR was performed with a total reaction volume  of 10 L, containing 1 L of single stranded cDNA, 5 L  of TaqMan® Gene Expression Master Mix (Applied  Biosystems) and 0.5 L of TaqMan® Gene Expression  Assays (Applied Biosystems) in Table 2, in 96 well re- action plates (2 L of cDNA was used for the Ocn quan- tification due to the lower Ocn transcript level in the  samples).  3. Results and Discussion  3.1. Overview  Figure 1 shows the standard TRIzol® RNA extraction   procedures with modifications required for extraction of  RNA from cells on resorbable materials. Using the stan- dard TRIzol® RNA extraction protocol as the basis, RNA  extraction was started with the porous TCP discs con  Table 1. Primers used in RT-PCR.  Gene  (Gene bank ID) Primer sequence Genomic  amplicon  cDNA  amplicon  5' ATGGATGACGATATCGCTG 3'  Mouse β-Actin  (NM_007393.2) 5' ATGAGGTAGTCTGTCAGGT 3' 1110 bp 569 bp  5' CCCAGAACATCACCTATCAC 3'  Mouse Col1  (NM_00742.3) 5' TTGGTCACGTTCAGTTGGTC 3' 639 bp  510 bp  Table 2. Taqman® Gene Expression Assays used in RT-qPCR.  Gene Gene symbol Assay ID Amplicon lengthReference sequence   -Actin Actb Mm02619580_g1 143bp NM_007393.3  Cbfa1 Runx2 Mm01269515_mH 74bp NM_009820.4  Col1 Col1a1 Mm00801666_g1 89bp NM_007742.3  Alpl Alpl Mm00475834_m1 65bp NM_007431.2  Ocn Bglap-rs1 Mm00649782_gH 89bp NM_031368.4   Simple Modifications to Standard TRIzol® Protocol Allow High-Yield RNA Extraction from Cells on Resorbable Materials  Copyright © 2011 SciRes.                                                                               JBNB  43 Table 3. Effects of addition of different solutions on the amount of undesirable precipitates formed (indicated by “+”; more  “+” indicates more precipitates) during the RNA precipitation step in a cell free system and the explanation of observation.  Tube Solution Solution volume  (L)  “Lysate” a  at 4°C (L)  Precipitates formed  “immediately”?  Observation   1 day later pH  1 / - 200 + + + + + + + 4.5  2 Water 20 200 + + + + + + 4.5  3 5M K Ac 20 200 + + + + + + + + + + 5.5  4 5M NH4Cl 20 200 - + + + + + 4.5  5 10M NH4Ac 20 200 + + + + + + + + + 5.5  In comparison with the samples without any solution added (Tube 1),     the addition of water (Tube 2) dilutes the ion concentration and reduces the precipitation.     the addition of KAc solution (Tube 3) increases the pH and increases the precipitation.   the addition of NH4Cl solution (Tube 4) dilutes the Ca ion and reduces the precipitation. (The NH4 ions probably have some effects on  reducing the amount of undesirable precipitates but the mechanism is not fully known.)   the addition of NH4Ac solution (Tube 5) dilutes the Ca ion in the solution but at the same time increases the pH, thus increases the  precipitation.  Precipitates appeared in all of the treatments after 1 day, indicating that there is a delay in the precipitation after the addition of water or NH4Cl.  a. “Lysate” here refers to the TRIzol® solution which has been incubated with crushed TCP but with TCP debris removed before addition of  salt solutions.  Table 4. Effects of dilution, pH and temperature on  the unde sirable precipitation in a cell free system .   Effect of dilution a Effect of pH c Effect of temperature d Ratio “ Lysate” b (L) Extra TRIzol® (L) Precipitation Solution addedPrecipitation  Immediate observation   1:0 100 /  +++   -   +++     0°C  -    4:1 80 20 - Water  ++     25°C  +++   3:2 60 40 - 2M HCl  +   Observation after 1 h   2:3 40 60 -      0°C  -    1:4 20 80 -      25°C  +++  a. Extra TRIzol® was added after TCP debris removal before chloroform addition.  b. “Lysate” here refers to the TRIzol® solution which has been incubated with crushed TCP but with TCP debris removed before extra TRIzol®  addition.  c. 20L of solution was added to 200L of “Lysate” after TCP debris removal before chloroform addition. HCl stands for hydrochloric acid.  d. It refers to the temperature of TRIzol® during crushing of TCP discs (0°C was maintained by putting the tube on ice while 25°C indicates that  the crushing of TCP was performed at room temperature).  Figure 1. Schematic showing the standard TRIzol® RNA extraction procedures shown on the left with modifications required  for RNA extraction from cells on resorbable materials denoted on the right.   Simple Modifications to Standard TRIzol® Protocol Allow High-Yield RNA Extraction from Cells on Resorbable Materials  Copyright © 2011 SciRes.                                                                              JBNB  44  taining the attached cells crushed in TRIzol®. TCP debris  was removed by centrifugation in Step 1 (Homogeniza- tion). Step 2 (Phase separation) and Step 3 (RNA pre- cipitation using isopropanol) were performed as de- scribed by the manufacturer. Using this procedure, unde- sirable co-precipitate appeared, making the precipitated  RNA unable to be dissolved in Step 5. Thus no RNA  could be extracted. Analysis of the undesirable precipita- tion which eventually leads to the suggested modifica- tions will be explained in the following.  3.2. Identification of the Undesirable Precipitate  To identify the components of the undesirable precipi-  tate, we studied the morphology and the composition of  the precipitate by SEM and EDX. SEM examination  shows that the precipitate is in the form of clustered  crystals (Figure 2(a)). From the EDX analysis (Figures  2(b) and 2(c)), the precipitate was found to be mainly  composed of Ca, O, C and N. Calcium thiocyanate  (Ca(SCN)2) and calcium acetate (Ca(C2H3O2)2) may be  the possible constituents of the precipitate, leading to the  interpretation of having the precipitate coming from the  dissolution of the calcium containing biomaterials during  the TRIzol® mediated cell lysis step, rather than being  the direct precipitation of components present in the  TRIzol® reagent.  3.3. Parameters Affecting the Undesir able  Co-Precipitation  Different approaches to get rid of the undesirable  co-precipitates were attempted and the key experiments  leading to the modifications are highlighted in this report.  In molecular biology, precipitation with ethanol is the  standard method to recover nucleic acids from aqueous  solutions and ammonium acetate is frequently used to  reduce the co-precipitation of unwanted contaminants  such as dNTPs or oligosaccharides with nucleic acids  [13]. This ethanol precipitation step has high similarity to  the RNA precipitation step using isopropanol in the  TRIzol® protocol. And having known that most ammo- nium, potassium, acetate and chloride compounds have  high solubility in aqueous solutions [14], we attempted to  avoid the undesirable co-precipitation by adding different    salt solutions in the phase separation step (Step 2 of Fig- ure 1). Cell-free system was used to simplify the analysis  and the results together with the explanation of observa- tion are summarised in Table 3. The addition of ammo- nium chloride solution eliminates the undesirable pre- cipitation but more importantly the results revealed that  dilution and pH are critical parameters in the precipita- tion process. Besides, we proposed that lower tempera- ture would reduce the precipitation by slowing down the  dissolution of calcium ions from TCP. Hence, we carried  out experiments to investigate the effects of these three  parameters: dilution, pH and temperature.    3.3.1. Effect of Dilution  From Table 3, the addition of water reduces the precipi- tation but it also dilutes other salts in the TRIzol® which  may affect the phase equilibrium in the phase separation  step and hence affects the normal RNA precipitation  process. Thus we have experimented using TRIzol® to  dilute the Ca ions after TCP debris removal. Surprisingly,  the addition of as little as 1/4 volume of TRIzol® already  eliminates the unwanted precipitation (Table 4), proba- bly by preventing the solution from being saturated in  one of the insoluble calcium compounds. For more solu- ble materials, larger extra TRIzol® to lysate ratio may be  required.  3.3.2. Effect of pH  Besides, the addition of HCl can reduce the precipitates  formed (Table 4). This observation indicates that lower  pH increases the solubility of the insoluble compounds,  thus less precipitates would be formed. Therefore we can  reduce the amount of precipitates by lowering the pH  during the RNA precipitation step. On the other hand,  increasing the pH would lower the solubility of the cal- cium phosphate materials [15], which in turn may reduce  the dissolution of Ca ions from materials that are more  soluble than TCP. By using “self-made TRIzol® reagent”   (a)                                 (b)                              (c)  Figure 2. (a) SEM photo of the precipitate, (b) EDX spectrum and (b) Atomic concentration of the precipitate in elemental  analysis using EDX (average ± SD).  Element Atomic % (average ± SD)  O 40.59 ±0.05  C 29.53 ±0.85  N 16.78 ±0.62  Ca 11.35 ±0.27  Au 1.76 ±0.02   Simple Modifications to Standard TRIzol® Protocol Allow High-Yield RNA Extraction from Cells on Resorbable Materials  Copyright © 2011 SciRes.                                                                               JBNB  45 (with all the components in TRIzol® reagent except so- dium acetate) at neutral pH to lyse the cells on the re- sorbable materials and adjusting the pH after material de- bris removal by using sodium acetate (2 M, pH 4) (50 µL  added per 1 mL), the undesirable co-precipitates can  probably be reduced.  3.3.3. Effect of Temperature  Since most chemical reactions are slower at lower tem- -perature, we have proposed that lower temperature  would reduce the undesirable precipitation by slowing  down the dissolution of Ca ions from TCP. This is con- firmed by experiments summarized in Table 4. Hence, it  is better to use chilled TRIzol® and keep the TRIzol®  with -TCP on ice during the crushing of materials so as  to reduce the amount of Ca ions dissolved from the  -TCP.   3.4. Suggestions on Modifications  From the above experiments, we summarized the factors  affecting the undesirable precipitation in Table 5. Based  on this, we proposed the modifications required for RNA  extraction from cells on porous -TCP discs as shown on  the right of Figure 1. (A sample protocol was attached to  the end of this article). On the other hand, TCP is only  one of the promising resorbable materials, while other  resorbable materials may have high application potential  in the future. Different materials differ greatly in solubil- ity in aqueous solution (Table 5) [16]. Analysis in Table  5 also suggests that increasing the extra TRIzol® to lysate  ratio, increasing the pH during crushing of the materials  and lowering the pH during the RNA precipitation step   can be used for materials which are more soluble than  TCP. These aim to minimize the dissolution of ions from  materials and the precipitation of the undesirable co-pre-  cipitates. On the other hand, TRI Reagent® and TRIsureTM  have similar extraction principles and procecures as  TRIzol®. Thus similar modifications can be made to their  RNA extraction protocols to extract RNA from cells on  resorbable materials in high yield.  3.5. Quality of the Extracted RNA   To evaluate the quality of RNA extracted using the  modified procedures, we used agarose gel electrophoresis  analysis and UV spectrometry to check the samples. Two  distinct bands showing the 28S and 18S ribosomal RNA  were observed and degradation of RNA was not detected  after the agarose gel electrophoresis (Figure 3(a)). By UV  spectrometry, the A260/A280 ratios were consistently   (a) (b) Figure 3. (a) Agarose gel image of RNA in 2% GelRed  pre-stained gel (b) Conventional RT-PCR of   -Actin (A1  and A2) and Col1 (C1 and C2), M: 100bp DNA ladder.  Table 5. Factors affecting the dissolution of materials in the homogenization step and the precipitation of undesirable pre- cipitates in the RNA precipitation step.   Dissolution of materials Precipitation of undesirable precipitates  Nature of  compounds  Different materials differ greatly in solubility. Relative  solubility a: MCPM ~ MCPA > DCPD > DCPA >>  -TCP > -TCP > TTCP >> CDHA > OCP > HA [16]  Most ammonium, potassium, acetate and chloride  compounds have high solubility in aqueous solutions  while many calcium compounds are insoluble [14].  Volume of  TRIzol®  A smaller TRIzol® volume reduces the total amount of  ions dissolved from the materials but the volume should  be large enough for effective lysis of the cells on  materials.  A larger volume of extra TRIzol® reduces the  concentration of ions which may contribute to the  undesirable precipitation.  pH  For many calcium phosphates (such as OCP, -TCP,  -TCP, HA and TTCP) a, a higher pH reduces the  dissolution rate within pH range of 4 to 7 [15].  A lower pH increases the solubility of the undesirable  precipitates, thus reduces the precipitation.  Temperature A lower temperature reduces the dissolution rate.  A higher temperature can probably increase the  solubility of the undesirable precipitates but a low  temperature is preferred to prevent RNA degradation. a. MCPM: monocalcium phosphate monohydrate; MCPA: monocalcium phosphate anhydrate; DCPD: dicalcium phosphate dihydrate;    DCPA: dicalcium phosphate anhydrate; OCP: octacalcium phosphate;-TCP: -tricalcium phosphate;-TCP: -tricalcium phosphate;  CDHA: calcium-deficient hydroxyapatite; HA: hydroxyapatite; TTCP: tetracalcium phosphate   Simple Modifications to Standard TRIzol® Protocol Allow High-Yield RNA Extraction from Cells on Resorbable Materials  Copyright © 2011 SciRes.                                                                             JBNB  close to 2.0 and the A260/230 ratios were higher than 1.0,  indicating that the RNA samples extracted by this me- thod are not carrying contaminating proteins and salts  (Table 6).   Finally, the quality of the RNA was confirmed by con- ventional RT-PCR and RT-qPCR. After DNase I treat- ment, reverse transcription and PCR amplification with  primer pairs specific to the transcripts from β-Actin gene  (a housekeeping gene as control) and Col1 gene (a chon- drogenic gene), specific amplicons with the correspond- ing molecular sizes were observed (Figure 3(b)). Fur- thermore, consistent Ct values from RT-qPCR analysis  on β-Actin, Col1 and other bone cell differentiation- markers such as Cbfa1, Alpl and Ocn (Table 7) were  noted, indicating that the RNA quality of these samples  is compatible with protocols for gene expression study.  In addition, this protocol allowed us to isolate 2 g of  total RNA from cells grown on 10 mm -TCP disc, an  amount enough for performing expression evaluation on  40 different target genes. This good yield allows the pro- tocol to be used for large scale analysis, when cell supply  is limited because of the lack of large volume of bioma- terials used in the study.    4. Conclusions  For RNA extraction from cells on porous -TCP, the  following three modifications are sufficient to obtain  high quality RNA: 1) in situ crushing of the porous discs  with cells in TRIzol® at low temperature 2) the use of  extra TRIzol® to dilute the lysate after TCP debris re- moval and 3) extra RNA washing step to remove the  salts more completely. Without modifications, the RNA  was often trapped in the undesirable precipitates which    Table 6. UV absorbance readings using Nanodrop of the  RNA extracted from cells on porous -TCP disc, indicating  the extracted RNA is of high quality.   A260/280  a A260/230 conc. (ng/mL)  average 2.00 2.05 223.23  SD 0.08 0.14 40.98  a. Using other spectrometric equipments for the UV absorbance  measurements often requires a dilution of the samplesand may  result in readings of A260/280 deviating from 2.00 but the RNA  may still be suitable for RT-PCR. In such case, the RNA quality  should be confirmed by gel electrophoresis.  Table 7. Ct values of   -Actin, Cbfa1, Alpl, Col1 and Ocn of  RT-qPCR with the RNA samples extracted using the modi- fied procedures.   β-Actin Cbfa1 Alpl Col1 Ocn  average 20.6 25.2 31.6 18.8 35.7  SD 0.6 0.4 0.2 0.3 0.5  prevent effective recovery and render TRIzol® extraction  method incompatible with studies using -TCP.  Analysis of various physical parameters affecting the  formation of undesirable co-precipitates suggests that a  combined protocol of increasing the extra TRIzol® to  lysate ratio, increasing the pH during crushing of materi- als and lowering the pH during the RNA precipitation  step would make extraction of RNA from cells cultured  on other more soluble materials possible.  In summary, this study introduces to the field some  easy-to-perform and low cost modifications to extract  RNA from cells grown on -TCP in high yield. It also  offers a direction for further modifications of the proce- dures in extracting nucleic acid samples from cells cul- tured on soluble ceramic materials. The impact on bio- medical development and applications could be tremen- dous.   5. Acknowledgements  We thank the constructive comments and technical as- sistances from members of the Bioengineering lab, Prof.  King L. Chow lab, Prof. Yang Leng lab of the Hong  Kong University of Science and Technology and the Na- tional Engineering Research Center for Biomaterials in  Sichuan University. This work was supported by the Re- search Project Competition Grant of the Hong Kong  University of Science and Technology (Grant no. RPC  07/08.EG02) and RGC Grant (Grant no. RGC660407).    6. Sample Protocol for RNA Isolation from  Cells Grown on Porous -TCP Discsa   Materials used: 10mm porous α-TCP discs with 9 × 104  cells plated and cultured for 6 days.  1) HOMOGENIZATION   At the day of analysis, wash the bioceramic disc  (containing cultured cells) with PBS twice to re- move trapped cell culture medium. Briefly dry the  disc on absorbent paper between washes.   Briefly dry the disc on absorbent paper, gently  break (not crush) the disc into smaller pieces and  transfer the pieces to a 1.5 ml microcentrifuge tube.   Add 0.5 ml of TRIzol® (Invitrogen) to the tube and  crush the disc into powder with a steel rod with the  tube placed on ice.   Incubate the tube for 5 min at room temperature to  lyse cells.   Centrifuge the tube at 12,000 x g for 5 min at 4°C  and transfer the clear orange lysate to a new tube.  Repeat this step if TCP debris is observed at the bot- aAll reagents and consumables involved in RNA experiments should be  free of RNase (Critical!). Besides, caution should be taken while using  TRIzol® (specifically phenol) and Chloroform.   Simple Modifications to Standard TRIzol® Protocol Allow High-Yield RNA Extraction from Cells on Resorbable Materials  Copyright © 2011 SciRes.                                                                               JBNB  47 tom of the tube.b  2) PHASE SEPARATION   Add another 0.5 ml of TRIzol® to the clear lysate  and mix the content.   Add 0.2 ml of chloroformc to the lysate and shake  vigorously by hand for 15s and incubate the tube for  2 min at room temperature.   Centrifuge the tube at 12,000 x g for 15 min at 4°C.  3) RNA PRECIPITATION   Transfer the aqueous supernatant to a new tube and  gently mix it with 0.5 ml of isopropanol by invert- ing the tube several times.   Incubate the tube for 10 min at room temperature  and centrifuge the tube at 12,000 x g for 10 min at  4°C  4) RNA WASH   Remove the supernatant, add 0.5 ml of 75% ethanol  to the tube and centrifuge at 7,500 x g for 5 min at  4°C. Repeat this washing step once.    5) REDISSOLVING THE RNA   Remove the ethanol in the last washd and air-dry the  RNA pellet (until no observable liquid droplet was  found).   Resuspend the RNA in RNase-free water / buffer  and incubate at 60°C for 10min. Then proceed to  gene expression studies after RNA quality check  and quantitation.  REFERENCES  [1] L. L. Hench and J. M. Polak, “Third-Generation Bio- medical Materials,” Science, Vol. 295, No. 5557, 2002,  pp. 1014-1017. doi:10.1126/science.1067404  [2] M. Vallet-Regí and J. M. González-Calbet, “Calcium  Phosphates as Substitution of Bone Tissues,” Progress in  Solid State Chemistry, Vol. 32, No. 1-2, 2004, pp. 1-31.    doi:10.1016/j.progsolidstchem.2004.07.001  [3] P. Habibovic, U. Gbureck, C. J. 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Besides, the sam- p les can be splitted into several extraction batches for easier handling i f required.  cBromo-chloropropane may be used instead of chloroform as a safe r and equally efficient phase-separation agent [17].  dWhen the amount of RNA is small, the RNA pellet may be difficult to  be observed by naked eye. In such case, the orientation of the tubes  during centrifugation should be noted so that the position of the tiny  RNA pellet is known. During this step, it is important to avoid pipet- ting the tiny precious RNA pellet together with the ethanol which  would then be discarded.   Simple Modifications to Standard TRIzol® Protocol Allow High-Yield RNA Extraction from Cells on Resorbable Materials  Copyright © 2011 SciRes.                                                                              JBNB  48  New York, 2003.    [15] E. Ferńndez, F. J. Gil, M. P. Ginebra, F. C. M. Driessens,  J. A. Planell and S. M. 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