Description of New Bioelectromechanical Properties in Alginate: An Insight with a Computer Simulation

Advances in Materials Physics and Chemistry
Vol.07 No.08(2017), Article ID:78503,13 pages
10.4236/ampc.2017.78026

Description of New Bioelectromechanical Properties in Alginate: An Insight with a Computer Simulation

A. Heredia1*, J. J. Gervacio-Arciniega2, V. Duarte-Alaniz3, O. Amelines-Sarria4,5, A. Rodríguez-Galván1, J. M. Siqueiros2

1Instituto de Ciencias Nucleares, Departamento de Química de Radiaciones y Radioquímica, Universidad Nacional Autónoma de México, Ciudad de México, Mexico

2Facultad de Ciencias Físico-Matemáticas, Benemérita Universidad Autónoma de Puebla, Puebla, México

3Instituto de Química, Universidad Nacional Autónoma de México, Ciudad de México, México

4Centro de Investigación y Desarrollo Tecnológico en Energías Renovables, Universidad de Ciencias y Artes de Chiapas, Tuxtla Gutiérrez, México

5Facultad de Ingeniería Mecánica, Universidad Pontificia Bolivariana Seccional Bucaramanga, Floridablanca, Colombia

Copyright © 2017 by authors and Scientific Research Publishing Inc.

This work is licensed under the Creative Commons Attribution International License (CC BY 4.0).

http://creativecommons.org/licenses/by/4.0/

Received: July 6, 2017; Accepted: August 14, 2017; Published: August 17, 2017

ABSTRACT

Alginate biopolymer from Tropicalgin C302245 was studied by means of piezoresponse force microscopy imaging, scanning electron microscopy, powder X-rays, infrared spectroscopy and computer simulations. Local piezoresponse force microscopy images show possible ferroelectric domains detected in the out of plane mode and these results are confirmed by the second harmonic generation analysis. Alginate powder is composed by diatom frustules containing a cristobalite-like compound, amorphous silica and chitin. The experimental results are explained by MM+ and PM3 computer simulations that establish that the self-assembly of the alginate molecules enhance the polarization increasing the molecular collective dipole moment. Alginate molecular properties might open interesting possibilities for organic technological applications.

Keywords:

Alginate, Piezoresponse Force Microscopy, Ferroelectricity, Macromolecular Self-Assembly

1. Introduction

In living matter, electricity plays a main role in signaling and other molecular- related functions as stated by Galvani and Volta [1] . Voltage-gated signaling [2] is found in a wide distribution of taxa, from bacterial biofilms [3] , plant tonoplasts [4] up to mammal neurons [5] , thus the relevance of the energy from potentials and moving electrons must be a prerequisite for cellular response. At the molecular scale, electric potentials might stimulate changes in the conformational features of peptides [6] and in the classic experiments of the synthesis of amino acids [7] electric potential was of main relevance. The Mexican scientist Alfonso Luis Herrera noting the importance of the electricity in molecules, stated “(...) Nevertheless, the modern and fertile ideas about the ionization of molecules tend to give prominence to the production of physico-chemical phenomena by direct or indirect, mediate or intermediate electric forces and actions. The true philosopher is always ready to believe these transformations of energy and the true naturalist expects and provides the constant transformation of species” [8] . Other works analyze the main role of bioferroelectricity in molecular order and functionality of biological membrane channels [9] [10] . Many biologically-originated materials possess piezoelectric properties at the nanoscale [11] such aspolymers, biomolecules and bio-structures already published [12] [13] [14] [15] [16] . It seems that molecular ferroelectricity is relevant in biology [9] [14] [17] [18] [19] thus, rising an enquiry: whether or not the biomolecular electrical properties are relevant in biological activity, coordinating an additional molecular selection and self-assembly? If so, that assumption might contribute to the understanding of the biological functionality [20] . Piezoelectricity was dis- covered on wood by Shubnikov in 1946, and afterwards in other organisms tissues (teeth, horns, and cartilages) [21] and soft tissues (human pineal gland [22] ), as well as on the micro and nanoscopic scales by using the piezoresponse force microscopy (PFM) [23] . The piezoresponse force microscopy is the most descriptive method to get insight into the piezoelectric and ferroelectric phenomena at the nanoscale [23] in different materials. Nevertheless, the comprehension of these phenomena at the molecule scale has not been explained accurately, more specifically, why polymers present this effect [24] .

Alginatesas biopolymers in bacteria seem to play a structural function, affording mechanical strength and flexibility, meanwhile the molecule grasps water [25] . Alginates are polymers of two alternating acidic monomers, α-L-gulu- ronic (G) and β-D-mannuronic (M) organized in different oligomers rich in G units and blocks rich in M units. The mechanical properties of alginates depend on the G: M ratio and has a relatively easy industrial production [26] . For this reason, and its biocompatibility, alginate has emerged as biologically relevant hydrogel material for drug delivery [27] . In other studies, alginate is used in inkjettechnology to produce three dimensional assemblies mediated by different voltages [28] [29] what makes us to consider the feasibility to possess some electromechanical features. Hence, it is a necessity to get an insight into the activity of the alginate under the electric field at the molecular-scale. Here, we report, the potential nanoscale bioferroelectricity in the biopolymer alginate (Figure 1). In biological self-assembled macromolecules, it is possible that different molecule- scale mechanisms activate ferroelectric memory effects [30] [31] [32] . These pro- perties will be useful to design green computer memories, biosensors and harvest energy devices [30] . The observed promising ferroelectric behavior adds a new important functionality to this well-known biomaterial.

2. Materials and Methods

The samples were the Alginate single dose Tropicalgin C302245, (lot 150884, Zhermack Clinical, Rome, Italy) commercially obtained. Directly from the pack- age, the samples were used with no further treatment.

2.1. Scanning Electron Microscopy (SEM)

All the samples were fixed in a sample holder using only carbon ribbon, without any additional preparation. Scanning electron microscopy (ultra high resolution JSM-7800 FS chottky Field Emission Scanning Electron Microscope) instrument was used. We performed the measurements in a vacuum of 0.55 MPa, with an acceleration voltage between 2 - 5 kV.

2.2. X-Ray Diffraction (XRD)

For the XRD study, powder samples were put in a Phillips X’pert instrument with a Cu-Kα1 radiation at room temperature. We performed the data collection using a step size of 0.5˚ over 10˚ - 80˚ 2θ range (Figure 2).

2.3. Attenuated Total Reflection-Fourier Transform Infrared Spectroscopy (ATR-FTIR)

Infrared spectra were performed in an ATR-FTIR instrument (Spectrum 100 FT-IR Spectrometer Perkin Elmer, Waltham, Massachusetts) from 4000 to 650 cm−1 scan (6 scans). A first inspection of the ATR-FTIR obtained data, showed the typical bands found for diatom biosilica [33] [34] (Figure 3).

2.4. Piezoresponse Force Microscopy (PFM)

Samples were cast and fixed with no further treatment to be visualized by the

(a) (b)

Figure 1. (a) SEM microphotographs showing the morphology of the diatom from alginate powder Tropicalgin C302245 and (b) the molecular structure used for the computer simulations.

Figure 2. X-ray diffractogram of the alginate powder sample where the crystalline material and amorphous organic biopolymeric (background) phase are identified. The peak height reflects aqualitative increase in size of the biopolymer-associated crystallites.

Figure 3. ATR-FTIR spectrum showing different bands corresponding to SiO2 from biosilica, alginate and chitin.

atomic force microscopy (AFM) and PFM methods. The PFM technique detects the mechanical response of the sample to an applied electric voltage (electrostriction) due to the converse piezoelectric effect. Alginate was already studied in the AFM, by casting the samples from water solutions having stable surfaces [35] . In our work, here, after a first inspection, we performed the imaging in the areas with flat geometry.A commercial atomic force microscope (XE-70, Park Systems, Suwon, Korea) with a conductive ElectricCont-G cantilever from Budget Sensors (free resonance frequency 13 kHz, force constant 0.4 N∙m−1) coupled with an external lock-in amplifier (SR865, Stanford Research Systems, USA) was used (Figure 4).

2.5. Molecular Simulations

HyperChem8.0.1. Molecular structures of β-D-mannuronate (M) and α-L-gu-

Figure 4. Second harmonic of the alginate sample ((a) and (e)). Atomic force microscopy tapping mode topography ((b), (f)) of a selected area of the Tropicalgin C302245 powder. ((c), (g)) Amplitude and ((d), (h)) Phase images. PFM signals ((c), (d), (g), (h)) in a selected area of the sample with a homogeneous topography exhibiting the blotched spatially resolved ferroelectric patterns ((c), (d)) appearing to be ferroelectric switched domains out of plane.

luronate (G) were created by using HyperChem8.0.1 and geometrically optimized for one up to 5 units (Figures 5-7). Further, the alginate (G-G-M-M units) was put together for self-assembly from two up to ten alginate chains (Figure 5(c) and Figure 5(d)). Molecular modeling MM+ was done with molecular mechanics and, afterwards, by semi-empirical quantum mechanics methods as implemented in the HyperChem program Version 8.0.1 (HyperCube, Canada). Geometry optimizations were used to obtain the optimized molecular coordinates at potential energy minima. Full geometry optimization of different alginate-forming monomers (β-D-mannuronate) and α-L-guluronate were performed by using the HyperChem settings in the MM+ force field (the Polak?Ri- biere conjugate gradient algorithm, and a root mean square gradient (RMS) of 0.0001 kcal∙Å−1∙mol−1). Molecular dynamics relaxation of the optimized structures was employed to obtain to possible local minima (step size of 0.001 ps, a simulation temperature of 298 K and ca. 8 ps each model). The optimized geometries obtained by the MM+ molecular mechanics method were further optimized with the PM3. In semi-empirical calculations, full geometry optimizations were performed on the Restricted Hartree-Fock (RHF) basis (Polak-Ribiere conjugate gradient algorithm, and total RMS gradient of 0.001 kcal∙Å−1∙mol−1 step size of 0.001 ps, constant simulation temperature of 298 K and ca. 3 ps each model).

GAMESS. The molecules were edited from HyperChem8.0.1 and afterwards in Avogadro 1.2.0 [36] and exported for GAMESS software [37] . We used the PM3 semi-empirical calculations and a run type of Optimization with Restricted Hartree-Fock (RHF) molecule charge 0 and spin multiplicity 1.

3. Results and Discussion

Alginate (Tropicalgin C302245) powder is composed by diatom frustules (Figure 1) seeming to have a highly crystalline material (Figure 2) resembling

(a) (b)(c) (d)

Figure 5. MM+ force field results show a loss in general stability values in the alginate molecules. A saturation region in the stability (in (a) at four to five units) through the augmentation of units is seen. In (b) an increase in the dipole moment is seen at the value of 4 units. The simulation of the assembly of different chains ((c), (d)) decreases the stability of the system such as in the increase single chain molecular mass ((a), (b)).

(a) (b) (c)

Figure 6. PM3 semi-empirical results show an increasing stability (decreasing values) of energy in (a) in the growth of an alginate chain and an increase in the dipole moment (b) and a reduction in the heat formation.

(a) (b) (c)

Figure 7. PM3 semi-empirical resultsin GAMESS (dotted lines) show decreasing energy values (a) when increasing the monomer residues and an increase in the dipole moment (b) and a reduction in the heat formation values (c). These results contrast with the experimental values (lines).

other studies containing opal-cristobalite of fossil diatoms [38] [39] . X-ray struc- tural parameters from alginate powder shows a very crystalline material corresponding tocristobalite crystalline solid (Figure 2). In the case the IR spectra, they show the characteristics set of SiO2 bands from biosilica [33] , alginate [40] [41] and chitin [42] [43] . Concretely, the band at 3437 cm−1 is due to the stretching vibration of -OH group and correspondingly, the IR band at ca.1617 cm−1 is due to the adsorbed water molecules. A strong and broad FTIR band at 1170 cm−1 with a shoulder close to 1200 cm−1 is usually assigned to the Si-O-Si asymmetric stretching vibrations, whereas the IR band at 793 cm−1 can be assigned to Si-O-Si symmetric stretching vibrations [44] . Alginate spectrum demonstrates the characteristic absorption bands of its polysaccharide structure (inset in Figure 3), symmetric 1414 cm−1 and asymmetric 1600 cm−1 (C?O stretching) from the carboxylate salt groups. Conversely, the bands at 1126 cm−1 (C?C stretching), 1021 cm−1 (C?O?C stretching) and 947 cm−1 (C?O stretching) are screened by the SiO2 bands. The partially masked chitin bands at ca. 3250 cm−1, (amide I) ca. 1650 cm−1 and amide II ca. 1550 cm−1 (in Figure 3, vertical gray lines in inset) confirms the presence of this molecule in diatom biosilica as described already [45] .

The AFM allows for a non-destructive inspection of the surface of the sample and the direct monitoring of possible domain structures by means of PFM (Figure 4(a) and Figure 4(b)). This procedure allows studying the local properties such as polarization reversal. Piezoresponse force microscopy in the resonance mode was used to obtain evidence of the ferroelectric behavior of alginate (4B). To determine the amplitude of the AC voltage used in the PFM measurements, the first and second harmonics of the alginate sample were measured by the application of Vac = 1 Vpp over the sample. Clearly, the first harmonic is greater than the second one (Figure 4(a)). These results confirm that alginate might present ferroelectricity [46] . The piezoresponse images (Figure 4(c) and Figure 4(d)), were obtained by applying 1 Vpp at 71.5 kHz on a 500 nm by 500 nm square area. The PFM phase (Figure 4(d)) zones present similar topographical heights (Figure 4(b)) although exposing opposite polarization, defining that the observed contrast is due to the changing orientation of the dipole moments. These results agree with theoretical calculations shown later. However, by using Vac = 2 Vpp, displaying a clear topography (Figure 4(F)), the second harmonic is higher than the first one (see Figure 4(e)) thus, presenting no domain contrast in amplitude [47] [48] (Figure 4(g) and Figure 4(h)). The alginate dipolar direction might correlate to the internal rotation of the dipole moment-related chemical groups in asymmetric carbon atoms in the polysaccharide [48] . Figure 4, shows the poled sample with areas with different polar phases that are distributed randomly along the alginate sample. The switching contrast (Figure 4(c) and Figure 4(g)) does not follow directly the topographic aspect, indicating that the rearrange effect might be due to the intrinsic ferroelectric properties of the alginate and not induced from the surface electrostatic effects. Our result agrees with other biopolymers [49] .

The computational molecular modeling of the different alginate units was performed to understand, at the molecular scale, the effects of the self-assembly on the dipole moments. An isolated monomer was optimized, and subsequently covalently linked to other monomers (up to 5 in Figure 5(a) and Figure 5(b)). The next procedure was to put to interact the 4 up to 10 molecules (Figure 5(c) and Figure 5(d)). Here, the models were studied by the geometry optimization of the total energy, and molecular dynamics cycles run using molecular mechanics (MM+) method in combination with a semi-empirical method PM3 (in RHF).

MM+ computer simulations show in Figure 5(a) and Figure 5(c), a reduction global stability values, contrasting with those from PM3 in HyperChem and GAMESS software, suggesting an increase in the thermodynamic stability. Alginate units in MM+ molecular simulations show an increment in the molecular dipole moment values when increasing the molecular mass of the chain up to 4 units and after wards a loss in dipole moment values are seen (Figure 5(b) and Figure 5(d)). In contrast, PM3 semi-empirical method in HyperChem, partially agrees with the MM+ in the enhancement of the dipole moment values when increasing the molecular size of the chain (Figure 5(b)) thus, making suitable that the increase in the alginate single chains molecular size, rises the flexibility of the molecules, yielding higher dipole moment values (Figure 6). PM3 semi- empirical simulation of alginate chain growth in GAMESS software, results in similar behavior to those obtained by HyperChem software although with different values. The most similar ones are the dipole moments in both software (Figure 6 and Figure 7).

PM3 semi-empirical values of the assemblies of different number of alginate chains (not shown) show increasing positive energy (loss in general stability and in the ΔH) what agrees with the fact that alginate molecules stabilize through the interaction with inorganic ions [50] [51] and other organic compounds [52] . This precedent allows us to further simulate in the future, the self-assembly of alginate chains, considering those stabilizing ions and molecules.

4. Conclusion

The alginate powder presents a clear content with different diatom species, together with the molecular assembly (Figures 1-3). The molecular structure resembles the SiO2 biosilica with features of a crystalline cristobalite-like solid (Figure 2 and Figure 3). Regarding the PFM imaging and switching behavior, our findings suggest that alginate presents a ferroelectric effect and an efficient optical second harmonic generation. The biophysical purpose or aim of this organic-inorganic ferroelectric component is far away from our study, although brings a possible molecular transducer and biocontrol for detection of local electrostatic charges. This kind of polymer can be easily applied in different bionanotechnological instruments developing electromechanical biocompatible systems. The direct measurements of the spontaneous polarization with the PFM in alginate are still necessary to understand its molecular origin. Nonetheless MM+ computer simulations bind together the increase of the molecular size of the polysaccharide and the variation of the energy values, electric dipole moment properties and of ΔH that further behaves such as contingent properties (Figures 5-7) in HyperChem and GAMESS software. The coordination of the genetic code to produce different molecular weights makes more elaborated to conclude the structural relationship between the dipole moments and the electromechanical behavior. Our preliminary results will be useful to attempt to understand these phenomena, mainly alginate self-assembly and the rising of the bioferroelectric effect.

Acknowledgements

Bach. InChem. Claudia Consuelo Camargo Raya (at ICN, UNAM) and Bach. Biol. Isabel Mejía Luna (At Departamento de física, Facultad de Ciencias, UNAM), (AH) to PAPIIT Project IA203616 and (AH) to Dirección General de Cómputo y de Tecnologías de Información y Comunicación (DGTIC) for Miztli facility through the Project SC16-1-IR-93. We also thank to Luciano Díaz González, Martín Cruz Villafañe, Luis Miguel Valdez Pérez, Ing. Juan Eduardo Murrieta León, Mat. Enrique Palacios Boneta and Phys. Antonio Ramírez Fer- nández for their technical assistance.

Cite this paper

Heredia, A., Ger- vacio-Arciniega, J.J., Duarte-Alaniz, V., Ame- lines-Sarria, O., Rodríguez-Galván, A. and Siqueiros, J.M. (2017) Description of New Bioelectromechanical Properties in Alginate: An Insight with a Computer Simulation. Advances in Materials Physics and Chemistry, 7, 334-346. https://doi.org/10.4236/ampc.2017.78026

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