ABSTRACT

Rice (Oryza sativa L.) presents a strategic role in social and economic levels. The aim of this study was to elucidate the presence of genetic variability for the genus Oryza, and the possibility of using genotypes with wild characteristics in rice breeding programs. The Oryza genus shows great genetic variability through wild genotypes available in the most varied environments around the world. The negative effects imposed by abiotic stresses such as flood, salinity, low temperatures, water deficiency and high temperatures may be minimized by the efficient identification of a genetic variability source from the Oryza genus. Among the main wild species presented by the Oryza genus, Oryza glumaepatula stands out being an active source of germplasm. The occurrence and preservation of genetic variability of Oryza genus is indispensable to obtain new rice genotypes, to guarantee food security for the human population, as well as to develop genotypes that adapt to climatic changes and natural adversities.

Keywords:

Oryza sativa, Beeding, Germplasm, Source Genetic Variability

1. Introduction

Rice (Oryza sativa L.) presents a strategic role in social and economic levels. This crop is essential for human nutrition for supplying 20% of the calories consumed, being considered a staple food for more than half of the world’s population [1] [2] [3] [4] [5]. Rice has an excellent nutritional balance, besides its wide adaptation in different environmental conditions. Therefore, it is considered a species of great potential to mitigate food scarcity in the world [6] [7].

According to the Food and Agriculture Organization of the United Nations [8] , rice is characterized as the second most cultivated cereal in the world, with production around 516 million tons of grain, being sown in an area of approximately 160 million hectares and average yield of 3200 kilos of grains per hectare. The Asian continent accounts for 90% of the world’s production, through China, India, Indonesia, Bangladesh, Vietnam, Thailand, Myanmar and Philippines. Brazil is the world’s ninth largest producer and contributes with 1.6% of the worldwide total production. The country is the largest producer outside the Asian continent, accounting for 13 million tons of grain [5] [9].

The continued populational growth and increased food demands are among the factors of extreme importance for today’s agriculture. Currently, about one billion people are chronically undernourished with an aggravated scenario in some specific situations. Unfortunately, there are no artifices capable of ensuring the agricultural system and providing appropriate conditions to feed a growing population expected to exceed nine billion people by the year 2050 [10].

An efficient use of natural resources and increased production are fundamental to meet the world’s food needs [11] [12] [13]. However, the search for new agricultural frontiers and the availability of natural resources is limited, exposing crops to a series of disturbing events caused by floods, salinity, water deficit, high and low temperatures, negatively interfering on grain yield [2] [12] [14] [15] [16] [17] [18].

Complex behaviors of rice plants are evidenced in response to these not fully understood events, since some aspects are determined by a large set of genes that express the morphological, physiological and biochemical attributes. They dependent on the occurrence of stressors that trigger negative actions and accumulation of free radicals in the cells, decreasing seed and grain yield [19] [20] [21].

Genetic breeding is fundamental to overcome the impacts of climate changes and the scarcity of non-renewable energy reserves, characterizing itself as a sustainable activity and promoting food security. However, the procedures that enabled rice breeding also restricted its genetic variability, narrowing the genetic base of genotypes currently used in breeding programs. Thereby, it is necessary to search and rescue the variability through genotypes with a certain degree of rusticity, as these wild individuals will be sources of genes and alleles vital for developing new genotypes tolerant to abiotic stresses [22].

In this context, the aim of this study was to elucidate the presence of genetic variability for the genus Oryza, and the possibility of using genotypes with wild characteristics in rice breeding programs.

2. Impact of Abiotic Stresses on Crop Development

Waterlogging is characterized by a generalized environmental stress, where the rapid decline in oxygen diffusion rate (O₂) during flooding is accompanied by a decrease in the availability of oxygen to the cell. It reduces energy production and compromises photosynthetic rates of the plant and accumulation of reserves [23]. Although rice is considered a tolerant crop, only a few specific cultivars exhibit tolerance to prolonged submersion, since most genotypes die after 14 days of complete submersion [24] [25] [26].

Salinity is characterized as one of the most devastating abiotic stresses. Salinized soils represent about 20% of the world area cultivated with rice [7]. It may result in adverse effects on crop germination, vigor and yield [27]. When plants are exposed to saline stress, ionic balance results in the manifestation of several physiological processes, including sodium uptake and exclusion, which unbalance the dynamics of water and nutrients supply [28] [29]. Most rice plants are able to acclimatize under low or moderate salinities, however, their development is severely limited when salinity reaches high levels. Thus, plant survival and growth depend on phenotypic plasticity for cellular ionic balance [30] [31].

The effect of low-temperature stress is a major environmental factor limiting growth, development, yield and geographical distribution of the crop, especially in temperate and high-altitude areas [32] [33]. Low temperatures affect the growth and development of plants at any phenological stage, from germination to grain filling. During germination, the most common symptoms are low rates and delayed seedling emergence, which may compromise crop grain yield by 25% [32] [34]. During the vegetative stages, it is possible to occur yellowing of leaves, reduction of tillering and delay of plant growth. During the reproductive period, this stress may cause sterility of flowers, preventing the development of pollen grains and consequently the formation, filling and number of grains per panicle [32] [35] [36] [37] [38].

Water deficit stress is defined as limiting, since it affects the yield potential of many crops and is considered one of the most damaging stresses for rice cultivation [39] [40]. Its effects may vary among genotypes, phenological stages of development, severity and duration, compromising yield and its components [41] [42].

High-temperature stress is characterized as one of the major concerns, being considered a result of climate change [19] [43]. Most cultivated rice genotypes occur in regions where temperatures are above the optimum for plant growth and development (22˚C to 28˚C), since any increase in average temperatures during sensitive periods of pant development may affect rice productive performance [44] [45]. The climatic variability is due to frequent episodes of high temperatures, which often coincide with the critical stages of crop development, such as flowering. There are predictions that rice yield might be reduced by up to 10% with an increase of 1˚C in the average temperature [46]. During seedlings initial growth, the occurrence of high temperatures impairs the establishment and uniformity of the field. In the anthesis, it may cause sterility and reduce the number of viable pollen grains, compromising rice yield.

3. The Oryza Genus

The Oryza genus belongs to the Poaceae family, Glumiflorae order, Ehrhartoideae subfamily, and Oryzae tribe [47]. It is composed by 20 to 24 species (depending on the taxonomic references) and spread worldwide [3] [48] [49]. The variability of this genus evidences 11 distinct genomes (Box 1), which are AA, BB, CC, BBCC, CCDD, EE, FF, GG, KKLL, HHJJ and HHKK [50].

Box 1. Species of the Oryza genus, genome, number of chromosomes and geographic dispersion.

Source: [43] , [52] , [53] , [54].

Species of the AA genome stand out due to the both cultivated species Oryza sativa L. (Asiatic rice) and Oryza glaberrima Steud (African rice) belong to this group [50]. Oryza sativa and Oryza glaberrima were independently domesticated from Oryza rufipogon in Asia, and Oryza barthii in Africa, respectively. Three ecogeographic groups were originated from Oryza sativa, indica, japonica and javanica or tropical japonica [51].

The Oryza glaberrima species is cultivated in West Africa, while Oryza sativa is widely distributed worldwide, being cultivated on all agricultural continents [55]. The Oryza sativa species is botanically characterized by presenting secondary ramifications in the panicles, persistent spikelets in the pedicel, and ligules up to 10 mm length. The Oryza glaberrima species do not present secondary ramification in the panicles, and are characterized by glumes, glabrous to little harsh leaves, red pericarp and ligules shorter than Oryza sativa [56].

Oryza indica and Oryza japonica subspecies differ in their morphological, physiological and genetic characteristics [57]. Among the most outstanding features of the two subspecies, there is grain shape, with Japonica genotypes presenting short, broad and thick grains, while Indica present long, narrow and slightly flat grains. Regarding the agronomic features, the subspecies Indica presents absence of awns, easy threshing, plants of light green color, large number of tilers and sensitivity to low temperatures. On the other hand, genotypes of the japonica subspecies present awns, tolerance to threshing, plants with dark green color, smaller number of tillers and tolerance to low temperatures, being the subspecies that represents 80% of the world’s production [36].

Genotypes from Indic germplasm have spread throughout flooded regions of tropical lowlands of South and Southeast Asia, and China. In Brazil, most cultivated genotypes of irrigated rice are included in this group, being the results of local selections and crosses between genotypes (dwarf gene). In contrast, the japonica subspecies is cultivated both in uplands and elevations of tropical forests of Southeast Asia, as in subtropical regions with lower air temperature, including Northeast Asia, Europe, Western United States, Chile and Australia. The traditional rain fed rice genotypes grown in Brazil present genetic base from this group [58] [59] [60]. These two subspecies are clearly differentiated based on their genomic structure [61] [62]. Regarding the number of genetic resources, there are more than 500 thousand accessions conserved in germplasm banks worldwide, of which 70% of the world’s collections are located in Asia [63].

Currently, breeding programs targeting the main agronomic attributes of rice, grain quality and yield are based on the search for germplasms source of genes and alleles that determine these characteristics. Therefore, wild accesses that present the necessary characteristics for acclimatization to abiotic stresses or disturbing conditions imposed by the growing environment are sought for breeding programs. In this context, it is necessary to identify where these accesses are located, which could be either the center of origin or genetic diversity of the species, as well as active germplasm banks that provide the necessary variability to breeders.

In Latin America, the genetic basis of rice is considered narrow, and genetic vulnerability occurs when an organism lacks genes or alleles to tolerate determined environmental or biological stress, which leads to crop vulnerability [64]. As strategies to potentiate gains or genetic progress of the crop, it is possible to employ wild genotypes or those with low breeding process, and then direct the genes or allelic forms of interest to the progenies.

In Brazil, four wild rice species are found, which are also distributed throughout Central America and other South American countries. These are Oryza glumaepatula Steud, Oryza alta, Oryza grandiglumis and Oryza latifolia. Among these, Oryza glumaepatula stands out for plant breeding, which presents AA genome similar to grown species. It also is widely distributed and is rarely found in places outside the water. It grows on the banks of rivers and lakes, and its presence is related to the direct light incidence. Usually, this species is known as floating rice. In response to the elevation of water levels of rivers, a fast elongation of their internodes occurs, with plants reaching seven meters height. When these plants break down, they originate large floating populations [22].

After identifying where to search and which genotypes will be useful in breeding program, the breeder may employ conventional breeding techniques, such as hybridization and selection strategies, as well as biotechnological tools that allow introgression of specific genes or gene blocks that, when combined with agronomic ideotype genitors, will potentiate traits of interest in the progeny [65]. The literature presents some researches that elucidate breeding procedures aimed at developing and identifying genotypes more responsive to situations of abiotic stresses (Figure 1).

In this sense, wild species of the Oryza genus may be considered an alternative to increase rice genetic variability. Individuals of these species may be used as sources of genes and alleles in crossing blocks. Thereby, genes of interest are introgressed to fix important characteristics, potentiating the genetic variability of

segregating population. It will increase the probability of identifying transgressive families in relation to their respective parents [31]. The search and identification of these superior families will allow the selection of genotypes along the segregating generations that show an escape from adverse conditions imposed by abiotic stresses inherent of the growing environments.

4. Conclusions

1) The Oryza genus shows great genetic variability through wild genotypes available in the most varied environments around the world.

2) The negative effects imposed by abiotic stresses such as flood, salinity, low temperatures, water deficiency and high temperatures may be minimized by the efficient identification of a genetic variability source from the Oryza genus.

3) Among the main wild species presented by the Oryza genus, Oryza glumaepatula stands out being an active source of germplasm.

4) The occurrence and preservation of genetic variability of Oryza genus is indispensable to obtain new rice genotypes, to guarantee food security for the human population, as well as to develop genotypes that adapt to climatic changes and natural adversities.

Cite this paper

Szareski, V.J., Carvalho, I.R., da Rosa, T.C., Dellagostin, S.M., de Pelegrin, A.J., Barbosa, M.H., dos Santos, O.P., Muraro, D.S., de Souza, V.Q., Pedó, T., Aumonde, T.Z. and Pegoraro, C. (2018) Oryza Wild Species: An Alternative for Rice Breeding under Abiotic Stress Conditions. American Journal of Plant Sciences, 9, 1093-1104. https://doi.org/10.4236/ajps.2018.96083

References